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University of Massachusetts Amherst researchers are using X-ray scans and computational models to learn the secrets of mantis shrimp, crustaceans who fire their appendages with amazing speed and force to ward off enemies and capture prey. On the left is a freeze frame from a high-speed video of an experiment in which a materials-testing machine compresses a mantis shrimp appendage to mimic the way the crustacean would prepare to strike. On the right is a finite element computer model of the appendage under similar loading conditions. Blue, or cold, regions represent areas with low calculated strain energy density. Red, or hot, regions have high calculated strain energy density. The comparisons show the model’s predicted behavior resembles the appendage’s physical behavior. (Images: Michael Rosario, University of Massachusetts Amherst. A video, "An inside look at the mantis shrimp's punching mechanism," is available in the Related Links box at right.)

Prime-time punch

March 26th, 2012 Updated: April 2nd, 2012

The mantis shrimp packs one of the strongest punches on Earth. Computational Science Graduate Fellow Michael Rosario is investigating the physics, design and material properties behind the crustacean’s prey-crunching wallop. His research has landed him on the National Geographic Wild channel.

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Multi-scale model of arterial blood flow.

Inside the skull

February 14th, 2012 Updated: February 14th, 2012

Modeling the elements of blood flow in the brain could help neurosurgeons to predict when and where an aneurysm might rupture – and when to operate.

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(a) Traditional approaches to address volume-change in battery materials use acetylene black as the conductive additive and PVDF polymer as the mechanical binder. (b) Conductive polymer with dual functionality, as a conductor and binder, could keep both the electric and mechanical integrity of the electrode during the battery cycles. (c) PF-type conductive polymers' molecular structure, with two key function groups in PFFOMB (carbonyl and methylbenzoic ester) tailor the conduction band and improve the mechanical binding force. (Click to enlarge schematic, courtesy of Lin-Wang Wang, Lawrence Berkeley National Laboratory.)

Power boost

January 19th, 2012 Updated: January 19th, 2012

Berkeley scientists have combined computational modeling and advanced materials synthesis to devise a low-cost anode that bolsters the feasibility of long-life lithium-ion batteries.

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StonyBrookViz_cover

Seeing beyond 3-D

December 28th, 2011 Updated: January 20th, 2012

High-dimensional visualization techniques at Stony Brook and Brookhaven are helping reveal the interactions that drive climate and other complexities.

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Mining for aerosols and other particles

December 28th, 2011 Updated: December 28th, 2011

Klaus Mueller’s latest n-dimensional visualization work capitalizes on a decade-long collaboration with Department of Energy atmospheric chemist Alla Zelenyuk, work aimed at seeing the proverbial forest amidst trees of data. At DOE’s Pacific Northwest National Laboratory, Zelenyuk specializes in using single-particle mass spectrometry to analyze the real-time transformations of nanoparticles. This includes atmospheric particles, such [...]

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A visualization of a lean hydrogen flame simulation shows three computed fields simultaneously. A bowl-shaped turbulent flame floats over the exit flow from a pipe that is swirling as it moves upward. The gray filaments at the bottom depict regions of high turbulence, the transparent red surface highlights the mixing region between the fuel from the pipe and the air outside, and the purple-to-red zone shows the concentration of nitrogen-based emissions from the flame.

Helping hydrogen along

October 5th, 2011 Updated: November 30th, 2011

Researchers have pursued clean hydrogen-based fuels for years. A Berkeley Lab team hopes to spur that quest with help from one of the world’s most powerful computers.

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The tiny white yeast colonies in the right panel interspersed with larger normal colonies are cells that have had a synthetic chromosome inserted and their DNA shuffled by the lab-induced SCRaMbLE system, which introduces changes that slow cell growth. By comparison, all colonies on the left are grown from the standard lab yeast strain and appear uniform. (Click on image to enlarge.)

Designer yeast

September 14th, 2011 Updated: November 30th, 2011

A Johns Hopkins University team has built a yeast chromosome from scratch, they report today in the journal Nature. Sarah Richardson used what she learned as a Computational Science Graduate Fellow to help design and monitor the chromosome’s construction.

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Boosting Berkeley Lab’s bacteria research

September 14th, 2011 Updated: November 30th, 2011

For one summer, Sarah Richardson postponed her work computerizing yeast genome research and probed bacteria instead. As part of her Department of Energy Computational Science Graduate Fellowship, Richardson served a 2009 practicum under Adam Arkin, director of Lawrence Berkeley National Laboratory’s Physical Biosciences Division. She made important contributions to Arkin’s research into an RNA-based transcription [...]

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A frame from an animation showing the possible route into the Atlantic Ocean of oil and dispersant from the spot of the Deepwater Horizon spill in the Gulf of Mexico.

A long view of Gulf oil spill

April 19th, 2011 Updated: November 30th, 2011

While others predicted when oil from the Deepwater Horizon spill in the Gulf of Mexico might reach beaches, ocean modelers at Los Alamos National Laboratory and the National Center for Atmospheric Research asked when gushing oil might exit the Gulf, where it would go and how diluted it’d be, up to a year later.

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Tracing CFCs and greenhouse gases

April 19th, 2011 Updated: November 30th, 2011

National Center for Atmospheric Research oceanographer Synte Peacock studies “the distribution of various tracers – something that tags a water mass and is carried around by ocean currents – to learn more about ocean circulation in the past and present.” These tracers include carbon and radiocarbon isotopes, paleotracers (fossils from the sea, in sediments and [...]

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An optimized sequence of parameter values in nuclear simulations. (Image courtesy of Stefan Wild.)

Pounding out atomic nuclei

March 7th, 2011 Updated: November 30th, 2011

Thousands of tiny systems called atomic nuclei – specific combinations of protons and neutrons – prove extremely difficult to study but have big implications for nuclear stockpile stewardship. To describe all of the nuclei and the reactions between them, a nationwide collaboration is devising powerful algorithms that run on high-performance computers.

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Cranking up the speed of DFT

March 7th, 2011 Updated: March 16th, 2011

Density functional theory (DFT) can be used to determine densities of protons and neutrons making up a nucleus. “If we can determine those densities precisely,” says Witold Nazarewicz, professor of physics at the University of Tennessee, “we can determine the binding energy – the energy stored in the nucleus.” The energy density functional (EDF) in [...]

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Small team carries large load

January 31st, 2011 Updated: November 30th, 2011

Sandia National Laboratories computer scientist Ronald Minnich calls the desktop-extension supercomputing project a large effort with a small team. “To do it with only four other people is pretty unusual,” Minnich says. “I would assume a normal company would allocate at least 10 times as many people to the effort. A lot of things we’ve [...]

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This is what it might look like if  a user's laptop and supercomputer had access to a common set of files. (Image courtesy of Ronald Minnich, Sandia National Laboratories.)

Laptop supercomputing

January 31st, 2011 Updated: November 30th, 2011

A small team led by Sandia National Laboratories is attempting to virtually put the world’s most powerful supercomputers on a user’s own desktop or laptop.

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The geometry of human coronary arteries from a CTA scan, shown at 12.5 micron resolution. The inset shows blood-flow geometry detail. The red in the detail highlights red blood cells, not endothelial shear stress (ESS), which is represented as a color map on the arterial walls. (Image courtesy of the author.)

Pressure and flow

November 16th, 2010 Updated: November 29th, 2011

The first large-scale simulation of blood flow in coronary arteries enlists a realistic description of the vessels’ geometries. Researchers reported on the simulation today at the SC10 supercomputing conference in New Orleans.

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Computational sciences gets a Harvard institute

November 16th, 2010 Updated: March 16th, 2011

Projects such as looking at blood flow in the coronary arteries highlight the value of computation to understand problems in a variety of disciplines, including engineering, medicine, biology, the physical sciences and business. Seeing the need to expand course offerings and graduate student research opportunities, Cherry Murray, dean of the Harvard School of Engineering and [...]

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A frame from a WRF, or weather research and forecasting model, that shows an area over Oklahoma where the FASTER fast-cloud physics project will be put to the test.

In climate modeling, speed matters

November 10th, 2010 Updated: November 30th, 2011

A Brookhaven team wants to build the ‘fast physics’ behind clouds, air-suspended particles and precipitation into global climate models.

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The wings that fly FASTER

November 10th, 2010 Updated: November 30th, 2011

If FASTER can be considered a jet that speeds global climate modelers to analyze fast physics processes, its wings are the testbed and associated research. The testbed integrates two major “fast” components: a single column model (SCM), a roughly 100 kilometer by 100 km column that complements traditional global climate models; and a numerical weather [...]

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This frame from the Via Lactea II visualization shows the dark matter halo as it might look today, more than 13.7 billion years since the Big Bang. Gravity has drawn the partcles into dense clumps, which retain much of their stucture as they are drawn toward the halo’s center.  The color scale shows dark matter density increasing from blue to white.

Seeing the invisible

October 6th, 2010 Updated: November 30th, 2011

Armed with computing power from Oak Ridge National Laboratory, researchers are detailing the nature of dark matter surrounding a galaxy much like our own Milky Way.

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Dark matter predictions put to test

October 6th, 2010 Updated: March 16th, 2011

Collisions in dark matter “clumps” should produce gamma rays, but a satellite looking for them has come up empty so far.

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Parsing particle experiments

October 6th, 2010 Updated: March 16th, 2011

A detector suggested dark matter collisions, but no other test has seen similar signs.

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Winding path leads to fluid career

September 20th, 2010 Updated: November 30th, 2011

Paul Fischer’s fascination with science, mathematics and engineering have landed him in a position to work with the world’s most powerful computers.

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This animation shows early-time pressure distribution for simulation of coolant flow in a 217-pin wire-wrapped nuclear reactor fuel subassembly, computed on 32,768 processors of the Argonne Leadership Computing Facility's Blue Gene/P. The program used nearly 1 billion data points distributed through the simulated subassembly to calculate properties like pressure and temperature over time. Please click the image to run the animation in a new window.     This animation shows early-time pressure distribution for simulation of coolant flow in a 217-pin wire-wrapped nuclear reactor fuel subassembly, computed on 32,768 processors of the Argonne Leadership Computing Facility's Blue Gene/P. The program used nearly 1 billion data points distributed through the simulated subassembly to calculate properties like pressure and temperature over time.

Nuclear predictive

September 20th, 2010 Updated: November 30th, 2011

Argonne National Laboratory applies mathematics and computation to engineer the next generation of nuclear reactors.

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Alejandro Rodriguez

From Cuba to Cambridge by way of Miami

June 16th, 2010 Updated: November 30th, 2011

The former Computational Science Graduate Fellowship recipient escaped the communist regime with his family, then found a love of physics.

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Using mathematical methods he helped develop, Alejandro Rodriguez has calculated Casimir forces in these and other complex structures.

Forceful thinking

June 16th, 2010 Updated: November 30th, 2011

A quantum curiosity called the Casimir force gums up micro- and nanomachines. Work at MIT led by a newly minted alumnus of the DOE Computational Science Graduate Fellowship suggests uses for the force – and ways around it.

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