Articles written by Thomas R. O'Donnell

About the Author

Thomas R. O'Donnell is senior science writer at the Krell Institute and a frequent contributor to DEIXIS.

September 2012

A spontaneous collaboration

September 6th, 2012 Updated: September 6th, 2012

In 2007, when Oak Ridge National Laboratory (ORNL) researchers calculated that adding boron would bend carbon nanotubes, they did little with the information. Boron was one of several elements the computational scientists plugged into their model as they investigated ways to induce useful changes in nanotube structures. There were experiments to compare with the results [...]

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nanosponge boomerang

Kinky nanotubes

September 6th, 2012 Updated: September 6th, 2012

With the help of Oak Ridge computations, scientists are probing the properties of macroscale sponges made of nanoscale carbon-boron tubes. The material could soak up oil spills, help store energy or meet other needs.

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August 2012

A visualization of a Vlasov-Poisson simulation for a bump-on-tail instability problem, where a non-equilibrium distribution of electrons drives an electrostatic wave. The image shows particle density as a function of space and velocity. (Jeffrey Hittinger, Lawrence Livermore National Laboratory.)

A passion for pressure

August 15th, 2012 Updated: August 15th, 2012

Plasmas are the purview of Livermore scientist and Computational Science Graduate Fellowship alumnus Jeffrey Hittinger. He works both sides of the fusion street – inertial confinement and magnetic confinement – while simulating aspects of these tremendously hot, fast-moving particle clouds.

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March 2012

University of Massachusetts Amherst researchers are using X-ray scans and computational models to learn the secrets of mantis shrimp, crustaceans who fire their appendages with amazing speed and force to ward off enemies and capture prey. On the left is a freeze frame from a high-speed video of an experiment in which a materials-testing machine compresses a mantis shrimp appendage to mimic the way the crustacean would prepare to strike. On the right is a finite element computer model of the appendage under similar loading conditions. Blue, or cold, regions represent areas with low calculated strain energy density. Red, or hot, regions have high calculated strain energy density. The comparisons show the model’s predicted behavior resembles the appendage’s physical behavior. (Images: Michael Rosario, University of Massachusetts Amherst. A video, "An inside look at the mantis shrimp's punching mechanism," is available in the Related Links box at right.)

Prime-time punch

March 26th, 2012 Updated: February 22nd, 2013

The mantis shrimp packs one of the strongest punches on Earth. Computational Science Graduate Fellow Michael Rosario is investigating the physics, design and material properties behind the crustacean’s prey-crunching wallop. His research has landed him on the National Geographic Wild channel.

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September 2011

Boosting Berkeley Lab’s bacteria research

September 14th, 2011 Updated: November 30th, 2011

For one summer, Sarah Richardson postponed her work computerizing yeast genome research and probed bacteria instead. As part of her Department of Energy Computational Science Graduate Fellowship, Richardson served a 2009 practicum under Adam Arkin, director of Lawrence Berkeley National Laboratory’s Physical Biosciences Division. She made important contributions to Arkin’s research into an RNA-based transcription [...]

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October 2010

This frame from the Via Lactea II visualization shows the dark matter halo as it might look today, more than 13.7 billion years since the Big Bang. Gravity has drawn the partcles into dense clumps, which retain much of their stucture as they are drawn toward the halo’s center.  The color scale shows dark matter density increasing from blue to white.

Seeing the invisible

October 6th, 2010 Updated: February 22nd, 2013

Armed with computing power from Oak Ridge National Laboratory, researchers are detailing the nature of dark matter surrounding a galaxy much like our own Milky Way.

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Dark matter predictions put to test

October 6th, 2010 Updated: March 16th, 2011

Collisions in dark matter “clumps” should produce gamma rays, but a satellite looking for them has come up empty so far.

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Parsing particle experiments

October 6th, 2010 Updated: March 16th, 2011

A detector suggested dark matter collisions, but no other test has seen similar signs.

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June 2010

Alejandro Rodriguez

From Cuba to Cambridge by way of Miami

June 16th, 2010 Updated: November 30th, 2011

The former Computational Science Graduate Fellowship recipient escaped the communist regime with his family, then found a love of physics.

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Using mathematical methods he helped develop, Alejandro Rodriguez has calculated Casimir forces in these and other complex structures.

Forceful thinking

June 16th, 2010 Updated: November 30th, 2011

A quantum curiosity called the Casimir force gums up micro- and nanomachines. Work at MIT led by a newly minted alumnus of the DOE Computational Science Graduate Fellowship suggests uses for the force – and ways around it.

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This shows the Western North American power grid with the analysis results of 200 overlaid possible contingencies. Red areas indicate vulnerable portions of the power grid that network operators must address. Gray areas are causes for concern and green areas are safe. Overlaying the 200 sets of risk-level data allows operators to visualize the collective risk of contingencies on the system.

Getting a grip on the grid

June 10th, 2010 Updated: February 18th, 2013

A PNNL team enlists new algorithms and powerful computers to quickly analyze which combinations of failures most threaten the power grid.

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Grids grasp at multiple threads to block blackouts

June 10th, 2010 Updated: March 16th, 2011

A supercomputer’s unusual qualities make it a good fit with electric system problems.

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March 2010

Putting catalysts on track

March 1st, 2010 Updated: March 16th, 2011

Computation and experimentation combine to improve and speed design of useful compounds.

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December 2009

Atomic-detailed model of lignocellulose of softwoods. Based on experimental data on the structure of cellulose (brown) and lignin (cyan and red).

Breaking the biomass barrier

December 22nd, 2009 Updated: March 16th, 2011

What Oak Ridge National Laboratory researchers are learning could help make ethanol from cellulose a viable fuel alternative – and help the United States replace foreign oil with a green, renewable resource.

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Program may mean cutting the tags

December 17th, 2009 Updated: February 18th, 2013

Image searches typically rely on tags – text humans have attached to the pictures to identify objects or people they depict. The algorithms PNNL scientists Rob Farber and Harold Trease have created could largely eliminate tags because they recognize content automatically in massive amount of data. The application could make it as easy to index [...]

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The big face off

December 17th, 2009 Updated: February 18th, 2013

Pacific Northwest National Laboratory researchers say their algorithms can analyze millions of video frames, pluck out the faces and quantify them to create searchable databases for facial identification.

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